PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_88BBF0441.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 308aa    MW: 33771.1 Da    PI: 6.3639
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_88BBF0441.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.67.9e-151564148
                           TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd+ lv+ +++ Gg+   W+  ++t g++R++k+c++rw +yl
  Traes_2BL_88BBF0441.1 15 KGPWTEEEDKTLVEHIQKRGGNvgGWRGLPKTAGLNRCGKSCRLRWTNYL 64
                           79**********************************************97 PP

2Myb_DNA-binding537.9e-1770114147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg++T++E+ l++ +++ lG++ W+tIa ++  gRt++++k++w+++
  Traes_2BL_88BBF0441.1  70 RGNFTEDEERLIITLHASLGNK-WATIATHLE-GRTDNEIKNYWNTH 114
                            89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4541064IPR017930Myb domain
SuperFamilySSF466892.55E-2712111IPR009057Homeodomain-like
SMARTSM007171.0E-51466IPR001005SANT/Myb domain
PfamPF002495.0E-121564IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-201671IPR009057Homeodomain-like
CDDcd001679.06E-71764No hitNo description
PROSITE profilePS5129425.54365119IPR017930Myb domain
SMARTSM007178.4E-1669117IPR001005SANT/Myb domain
PfamPF002493.8E-1570114IPR001005SANT/Myb domain
CDDcd001675.09E-1272115No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2572119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRSPCCSHD AGVKKGPWTE EEDKTLVEHI QKRGGNVGGW RGLPKTAGLN RCGKSCRLRW  60
TNYLCPDIKR GNFTEDEERL IITLHASLGN KWATIATHLE GRTDNEIKNY WNTHIRKKLL  120
RMGVDPVTHQ QLPPNQSHHH LPEALLWAAA AASLGGMDTG ALMQAQLLQQ LLRTIGSNND  180
ATNLVANLAA ANAVLNSSGS MVPNLLLQDQ MNCLQPGYLC NTSNFAEQHV VQQHLTNDTS  240
PGTSSFAAAE QAGQLCNTAA SFAPHDAAPQ LPAQEFACLL EPMTELPDLC SLESDSFWKE  300
ILEDSYRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-281511927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794321e-116HF679432.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB26 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581590.21e-142PREDICTED: transcription factor MYB39
TrEMBLW5BC930.0W5BC93_WHEAT; Uncharacterized protein
STRINGBGIOSGA014443-PA1e-110(Oryza sativa Indica Group)
STRINGLOC_Os04g50680.11e-110(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-68myb domain protein 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]